PoplarV1, Main, Exploration, bibRecord, 000B47

Admixture mapping in interspecific Populus hybrids identifies classes of genomic architectures for phytochemical, morphological and growth traits.

Identifieur interne : 000B47 ( Main/Exploration ); précédent : 000B46; suivant : 000B48

Admixture mapping in interspecific Populus hybrids identifies classes of genomic architectures for phytochemical, morphological and growth traits.

Auteurs : Luisa Bresadola [Suisse] ; Céline Caseys [Suisse, États-Unis] ; Stefano Castiglione [Italie] ; C Alex Buerkle [États-Unis] ; Daniel Wegmann [Suisse] ; Christian Lexer [Suisse, Autriche]

Source :

The New phytologist [ 1469-8137 ] ; 2019.

RBID : pubmed:31104343

Descripteurs français

KwdFr :
- Caractère quantitatif héréditaire (MeSH), Cartographie chromosomique (MeSH), Composés phytochimiques (métabolisme), Déséquilibre de liaison (génétique), Génome végétal (MeSH), Hybridation génétique (MeSH), Phénotype (MeSH), Populus (anatomie et histologie), Populus (croissance et développement), Populus (génétique), Probabilité (MeSH), Spécificité d'espèce (MeSH), Étude d'association pangénomique (MeSH).
MESH :
- anatomie et histologie : Populus.
- croissance et développement : Populus.
- génétique : Déséquilibre de liaison, Populus.
- métabolisme : Composés phytochimiques.
- Caractère quantitatif héréditaire, Cartographie chromosomique, Génome végétal, Hybridation génétique, Phénotype, Probabilité, Spécificité d'espèce, Étude d'association pangénomique.

English descriptors

KwdEn :
- Chromosome Mapping (MeSH), Genome, Plant (MeSH), Genome-Wide Association Study (MeSH), Hybridization, Genetic (MeSH), Linkage Disequilibrium (genetics), Phenotype (MeSH), Phytochemicals (metabolism), Populus (anatomy & histology), Populus (genetics), Populus (growth & development), Probability (MeSH), Quantitative Trait, Heritable (MeSH), Species Specificity (MeSH).
MESH :
- chemical , metabolism : Phytochemicals.
- anatomy & histology : Populus.
- genetics : Linkage Disequilibrium, Populus.
- growth & development : Populus.
- Chromosome Mapping, Genome, Plant, Genome-Wide Association Study, Hybridization, Genetic, Phenotype, Probability, Quantitative Trait, Heritable, Species Specificity.

Abstract

The genomic architecture of functionally important traits is key to understanding the maintenance of reproductive barriers and trait differences when divergent populations or species hybridize. We conducted a genome-wide association study (GWAS) to study trait architecture in natural hybrids of two ecologically divergent Populus species. We genotyped 472 seedlings from a natural hybrid zone of Populus alba and Populus tremula for genome-wide markers from reduced representation sequencing, phenotyped the plants in common gardens for 46 phytochemical (phenylpropanoid), morphological and growth traits, and used a Bayesian polygenic model for mapping. We detected three classes of genomic architectures: traits with finite, detectable associations of genetic loci with phenotypic variation in addition to highly polygenic heritability; traits with indications for polygenic heritability only; and traits with no detectable heritability. For the first class, we identified genome regions with plausible candidate genes for phenylpropanoid biosynthesis or its regulation, including MYB transcription factors and glycosyl transferases. GWAS in natural, recombinant hybrids represent a promising step towards resolving the genomic architecture of phenotypic traits in long-lived species. This facilitates the fine-mapping and subsequent functional characterization of genes and networks causing differences in hybrid performance and fitness.

DOI: 10.1111/nph.15930
PubMed: 31104343
PubMed Central: PMC6771622

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 000897
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Le document en format XML

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<profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Chromosome Mapping (MeSH)</term>
<term>Genome, Plant (MeSH)</term>
<term>Genome-Wide Association Study (MeSH)</term>
<term>Hybridization, Genetic (MeSH)</term>
<term>Linkage Disequilibrium (genetics)</term>
<term>Phenotype (MeSH)</term>
<term>Phytochemicals (metabolism)</term>
<term>Populus (anatomy & histology)</term>
<term>Populus (genetics)</term>
<term>Populus (growth & development)</term>
<term>Probability (MeSH)</term>
<term>Quantitative Trait, Heritable (MeSH)</term>
<term>Species Specificity (MeSH)</term>
</keywords>
<keywords scheme="KwdFr" xml:lang="fr"><term>Caractère quantitatif héréditaire (MeSH)</term>
<term>Cartographie chromosomique (MeSH)</term>
<term>Composés phytochimiques (métabolisme)</term>
<term>Déséquilibre de liaison (génétique)</term>
<term>Génome végétal (MeSH)</term>
<term>Hybridation génétique (MeSH)</term>
<term>Phénotype (MeSH)</term>
<term>Populus (anatomie et histologie)</term>
<term>Populus (croissance et développement)</term>
<term>Populus (génétique)</term>
<term>Probabilité (MeSH)</term>
<term>Spécificité d'espèce (MeSH)</term>
<term>Étude d'association pangénomique (MeSH)</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="metabolism" xml:lang="en"><term>Phytochemicals</term>
</keywords>
<keywords scheme="MESH" qualifier="anatomie et histologie" xml:lang="fr"><term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="anatomy & histology" xml:lang="en"><term>Populus</term>
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<keywords scheme="MESH" qualifier="croissance et développement" xml:lang="fr"><term>Populus</term>
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<keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Linkage Disequilibrium</term>
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<keywords scheme="MESH" qualifier="growth & development" xml:lang="en"><term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Déséquilibre de liaison</term>
<term>Populus</term>
</keywords>
<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr"><term>Composés phytochimiques</term>
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<term>Genome-Wide Association Study</term>
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<term>Probability</term>
<term>Quantitative Trait, Heritable</term>
<term>Species Specificity</term>
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<term>Cartographie chromosomique</term>
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<term>Hybridation génétique</term>
<term>Phénotype</term>
<term>Probabilité</term>
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<front><div type="abstract" xml:lang="en">The genomic architecture of functionally important traits is key to understanding the maintenance of reproductive barriers and trait differences when divergent populations or species hybridize. We conducted a genome-wide association study (GWAS) to study trait architecture in natural hybrids of two ecologically divergent Populus species. We genotyped 472 seedlings from a natural hybrid zone of Populus alba and Populus tremula for genome-wide markers from reduced representation sequencing, phenotyped the plants in common gardens for 46 phytochemical (phenylpropanoid), morphological and growth traits, and used a Bayesian polygenic model for mapping. We detected three classes of genomic architectures: traits with finite, detectable associations of genetic loci with phenotypic variation in addition to highly polygenic heritability; traits with indications for polygenic heritability only; and traits with no detectable heritability. For the first class, we identified genome regions with plausible candidate genes for phenylpropanoid biosynthesis or its regulation, including MYB transcription factors and glycosyl transferases. GWAS in natural, recombinant hybrids represent a promising step towards resolving the genomic architecture of phenotypic traits in long-lived species. This facilitates the fine-mapping and subsequent functional characterization of genes and networks causing differences in hybrid performance and fitness.</div>
</front>
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<Abstract><AbstractText>The genomic architecture of functionally important traits is key to understanding the maintenance of reproductive barriers and trait differences when divergent populations or species hybridize. We conducted a genome-wide association study (GWAS) to study trait architecture in natural hybrids of two ecologically divergent Populus species. We genotyped 472 seedlings from a natural hybrid zone of Populus alba and Populus tremula for genome-wide markers from reduced representation sequencing, phenotyped the plants in common gardens for 46 phytochemical (phenylpropanoid), morphological and growth traits, and used a Bayesian polygenic model for mapping. We detected three classes of genomic architectures: traits with finite, detectable associations of genetic loci with phenotypic variation in addition to highly polygenic heritability; traits with indications for polygenic heritability only; and traits with no detectable heritability. For the first class, we identified genome regions with plausible candidate genes for phenylpropanoid biosynthesis or its regulation, including MYB transcription factors and glycosyl transferases. GWAS in natural, recombinant hybrids represent a promising step towards resolving the genomic architecture of phenotypic traits in long-lived species. This facilitates the fine-mapping and subsequent functional characterization of genes and networks causing differences in hybrid performance and fitness.</AbstractText>
<CopyrightInformation>© 2019 The Authors. New Phytologist © 2019 New Phytologist Trust.</CopyrightInformation>
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<AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Bresadola</LastName>
<ForeName>Luisa</ForeName>
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<AffiliationInfo><Affiliation>Swiss Institute of Bioinformatics, 1700, Fribourg, Switzerland.</Affiliation>
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<Author ValidYN="Y"><LastName>Lexer</LastName>
<ForeName>Christian</ForeName>
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<AffiliationInfo><Affiliation>Department of Biology, University of Fribourg, Chemin du Musée 10, 1700, Fribourg, Switzerland.</Affiliation>
</AffiliationInfo>
<AffiliationInfo><Affiliation>Department of Botany and Biodiversity Research, Faculty of Life Sciences, University of Vienna, Rennweg 12, A-1030, Vienna, Austria.</Affiliation>
</AffiliationInfo>
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<Month>06</Month>
<Day>23</Day>
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Admixture mapping in interspecific Populus hybrids identifies classes of genomic architectures for phytochemical, morphological and growth traits.

Admixture mapping in interspecific Populus hybrids identifies classes of genomic architectures for phytochemical, morphological and growth traits.

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